I don't believe there is an option to set proxy usage on a project level. If you had 2 licenses of GSA SER, then you could split your projects accordingly, 1 with proxies and 1 without.
I don't think so either, I was actually thinking it would be nice to be able to use a certain set of proxies that get used ONLY for this specific reason recently, but the exact context is slipping my mind right now.
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