Import from site lists & filters

Hi guys, I have a question regarding the way GSA SER works if I ONLY import from site lists. If I set a project to use ONLY site lists, is GSA SER still using the options from "Options > Filter URLs" ? I mean, will GSA SER still use my settings regarding outbound links, pr, stop words etc ?
I ask this because I remember reading here that if I use ONLY global lists GSA SER will not check things like outbound links, stop words and others like mentioned above. I might also be wrong because I don't remember exactly what I read at that time...
Thank you.
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